Publications

All Publications of BRAIN-TO Lab since 2019

View all of BRAIN-TO’s publications in Pubmed.

Please also see Our Team's page for individual member's publication lists.

Peer-reviewed Journal Articles

 

In press

  1. Frässle, S., Aponte, E.A., Bollmann, S., Brodersen, K.H., Do, C.T., Harrison, O.K., Harrison, S.J., Heinzle, J., Iglesias, S., Kasper, L., Lomakina, E.I., Mathys, C., Müller-Schrader, M., Pereira, I., Petzschner, F.H., Raman, S., Schöbi, D., Toussaint, B., Weber, L.A., Yao, Y., Stephan, K.E., 2021. TAPAS: An Open-Source Software Package for Translational Neuromodeling and Computational Psychiatry. Front. Psychiatry 12. https://doi.org/10.3389/fpsyt.2021.680811
  2. Han, S., Eun, S., Cho, H., Uludaǧ, K., Kim, S.-G., 2021. Improvement of sensitivity and specificity for laminar BOLD fMRI with double spin-echo EPI in humans at 7 T. NeuroImage 241, 118435.https://doi.org/10.1016/j.neuroimage.2021.118435
  3. Uludag, K., Havlicek, M., 2021. Determining laminar neuronal activity from BOLD fMRI using a generative model. Progress in Neurobiology 102055.https://doi.org/10.1016/j.pneurobio.2021.102055

 

2021

  1. Haast, R.A.M., Lau, J.C., Ivanov, D., Menon, R.S., Uludağ, K., Khan, A.R., 2021. Effects of MP2RAGE B1+ sensitivity on inter-site T1 reproducibility and hippocampal morphometry at 7T. NeuroImage 224, 117373. https://doi.org/10.1016/j.neuroimage.2020.117373
  2. Harrison, S.J., Bianchi, S., Heinzle, J., Stephan, K.E., Iglesias, S., Kasper, L., 2021. A Hilbert-based method for processing respiratory timeseries. NeuroImage 230, 117787. https://doi.org/10.1016/j.neuroimage.2021.117787
  3. Kashyap, S., Ivanov, D., Havlicek, M., Huber, L., Poser, B.A., and Uludağ, K., 2021. Sub-millimetre resolution laminar fMRI using Arterial Spin Labelling in humans at 7 T. PLOS ONE 16, e0250504. https://doi.org/10.1371/journal.pone.0250504
  4. Maier, O., Baete, S.H., Fyrdahl, A., Hammernik, K., Harrevelt, S., Kasper, L., Karakuzu, A., Loecher, M., Patzig, F., Tian, Y., Wang, K., Gallichan, D., Uecker, M., Knoll, F., 2021. CG-SENSE revisited: Results from the first ISMRM reproducibility challenge. Magnetic Resonance in Medicine 85, 1821-1839. https://doi.org/10.1002/mrm.28569
  5. Wiesner, H.M., Balla, D.Z., Scheffler, K., Uğurbil, K., Zhu, X.-H., Chen, W., Uludağ, K., Pohmann, R., 2021. Quantitative and simultaneous measurement of oxygen consumption rates in rat brain and skeletal muscle using 17O MRS imaging at 16.4T. Magnetic Resonance in Medicine 85, 2232-2246. https://doi.org/10.1002/mrm.28552
  6. Kurban, D., Ivanov, D., Kashyap, S., Huber, L., Liberman, G., and Poser, B. A., 2021. Concurrent CBF and BOLD fMRI with dual-echo spiral simultaneous multi-slice acquisitions at 7T. NeuroImage 247, 118820. https://doi.org/10.1016/j.neuroimage.2021.118820
  7. Pfaffenrot, V., Voelker, M. N., Kashyap, S., and Koopmans, P. J., 2021. Laminar fMRI using T2-prepared multi-echo FLASH. NeuroImage 236, 118163. https://doi.org/10.1016/j.neuroimage.2021.118163

 

2020

  1. Havlicek, M., Uludağ, K., 2020. A dynamical model of the laminar BOLD response. Neuroimage 204, 116209. https://doi.org/10.1016/j.neuroimage.2019.116209
  2. Huber, L., Finn, E.S., Chai, Y., Goebel, R., Stirnberg, R., Stöcker, T., Marrett, S., Uludag, K., Kim, S.-G., Han, S., Bandettini, P.A., Poser, B.A., 2020. Layer-dependent functional connectivity methods. Prog Neurobiol 101835. https://doi.org/10.1016/j.pneurobio.2020.101835
  3. Lau, J.C., Xiao, Y., Haast, R.A.M., Gilmore, G., Uludağ, K., MacDougall, K.W., Menon, R.S., Parrent, A.G., Peters, T.M., Khan, A.R., 2020. Direct visualization and characterization of the human zona incerta and surrounding structures. Hum Brain Mapp. https://doi.org/10.1002/hbm.25137
  4. Marquardt, I., De Weerd, P., Schneider, M., Gulban, O.F., Ivanov, D., Wang, Y., Uludağ, K., 2020. Feedback contribution to surface motion perception in the human early visual cortex. Elife 9. https://doi.org/10.7554/eLife.50933
  5. Priovoulos, N., van Boxel, S.C.J., Jacobs, H.I.L., Poser, B.A., Uludag, K., Verhey, F.R.J., Ivanov, D., 2020. Unraveling the contributions to the neuromelanin-MRI contrast. Brain Struct Funct. https://doi.org/10.1007/s00429-020-02153-z

 

2019

  1. Betts, M.J., Kirilina, E., Otaduy, M.C.G., Ivanov, D., Acosta-Cabronero, J., Callaghan, M.F., Lambert, C., Cardenas-Blanco, A., Pine, K., Passamonti, L., Loane, C., Keuken, M.C., Trujillo, P., Lüsebrink, F., Mattern, H., Liu, K.Y., Priovoulos, N., Fliessbach, K., Dahl, M.J., Maaß, A., Madelung, C.F., Meder, D., Ehrenberg, A.J., Speck, O., Weiskopf, N., Dolan, R., Inglis, B., Tosun, D., Morawski, M., Zucca, F.A., Siebner, H.R., Mather, M., Uludag, K., Heinsen, H., Poser, B.A., Howard, R., Zecca, L., Rowe, J.B., Grinberg, L.T., Jacobs, H.I.L., Düzel, E., Hämmerer, D., 2019. Locus coeruleus imaging as a biomarker for noradrenergic dysfunction in neurodegenerative diseases. Brain 142, 2558–2571. https://doi.org/10.1093/brain/awz193
  2. Düzel, E., Acosta-Cabronero, J., Berron, D., Biessels, G.J., Björkman-Burtscher, I., Bottlaender, M., Bowtell, R., Buchem, M.V., Cardenas-Blanco, A., Boumezbeur, F., Chan, D., Clare, S., Costagli, M., de Rochefort, L., Fillmer, A., Gowland, P., Hansson, O., Hendrikse, J., Kraff, O., Ladd, M.E., Ronen, I., Petersen, E., Rowe, J.B., Siebner, H., Stoecker, T., Straub, S., Tosetti, M., Uludag, K., Vignaud, A., Zwanenburg, J., Speck, O., 2019. European Ultrahigh-Field Imaging Network for Neurodegenerative Diseases (EUFIND). Alzheimers Dement (Amst) 11, 538–549. https://doi.org/10.1016/j.dadm.2019.04.010
  3. Kleinloog, J.P.D., Mensink, R.P., Ivanov, D., Adam, J.J., Uludağ, K., Joris, P.J., 2019. Aerobic Exercise Training Improves Cerebral Blood Flow and Executive Function: A Randomized, Controlled Cross-Over Trial in Sedentary Older Men. Front Aging Neurosci 11, 333. https://doi.org/10.3389/fnagi.2019.00333

 

Abstracts

2021

  1. Dubovan, P., Kasper, L., Uludağ, K., Baron, C.A., 2021. On the impact of B0 map resolution and undersampling on reconstructions using expanded encoding models, in: Proc. Intl. Soc. Mag. Reson. Med. 29. Presented at the ISMRM, Virtual, p. 892. https://cds.ismrm.org/protected/21MPresentations/abstracts/0892.html
  2. Wu, Z., Kasper, L., Uludağ, K., 2021. Radial Navigator (radNAV) for Rapid GRE (Turbo-FLASH) Sequence, in: Proc. Intl. Soc. Mag. Reson. Med. 29. Presented at the ISMRM, Virtual, p. 1367. https://cds.ismrm.org/protected/21MPresentations/abstracts/1367.html
  3. Haast, R. A. M., Kashyap, S., Yousif, M. D., Ivanov, D., Poser, B. A., and Khan, A. R., 2021. Delineating perfusion and the effects of vascularisation patterns across the hippocampal subfields at 7T, in: Proc. Intl. Soc. Mag. Reson. Med. 29. Presented at the ISMRM, Virtual, p. 0095. https://index.mirasmart.com/ISMRM2021/PDFfiles/0095.html
  4. Kashyap, S., Haast, R. A. M., Kirk, T. F., Vu, A. T., Kurban, D., Hellenbrand, R., Wiggins, C. J., Roebroeck, A., Khan, A. R., Feinberg, D. A., Poser, B. A., and Ivanov, D., 2021. The impact of B1+ on the optimisation of high-resolution ASL acquisitions at 7T, in: Proc. Intl. Soc. Mag. Reson. Med. 29. Presented at the ISMRM, Virtual, p. 1417. https://index.mirasmart.com/ISMRM2021/PDFfiles/1417.html

    5.  

2020

  1.  Wu, Z., Uludağ, K., 2020. Motion estimation and correction with joint optimization for wave-CAIPI acquisition, in: Proc. Intl. Soc. Mag. Reson. Med. 28. Presented at the ISMRM, Sydney, Australia, p. 469. https://cds.ismrm.org/protected/20MPresentations/abstracts/0469.html