Publications
All Publications of BRAIN-TO Lab since 2019
View all of BRAIN-TO’s publications in Pubmed.
Please also see Our Team's page for individual member's publication lists.
Peer-reviewed Journal Articles
In press
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Frässle, S., Aponte, E.A., Bollmann, S., Brodersen, K.H., Do, C.T., Harrison, O.K., Harrison, S.J., Heinzle, J., Iglesias, S., Kasper, L., Lomakina, E.I., Mathys, C., Müller-Schrader, M., Pereira, I., Petzschner, F.H., Raman, S., Schöbi, D., Toussaint, B., Weber, L.A., Yao, Y., Stephan, K.E., 2021. TAPAS: An Open-Source Software Package for Translational Neuromodeling and Computational Psychiatry. Front. Psychiatry 12. https://doi.org/10.3389/fpsyt.2021.680811
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Han, S., Eun, S., Cho, H., Uludaǧ, K., Kim, S.-G., 2021. Improvement of sensitivity and specificity for laminar BOLD fMRI with double spin-echo EPI in humans at 7 T. NeuroImage 241, 118435.https://doi.org/10.1016/j.neuroimage.2021.118435
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Uludag, K., Havlicek, M., 2021. Determining laminar neuronal activity from BOLD fMRI using a generative model. Progress in Neurobiology 102055.https://doi.org/10.1016/j.pneurobio.2021.102055
2021
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Haast, R.A.M., Lau, J.C., Ivanov, D., Menon, R.S., Uludağ, K., Khan, A.R., 2021. Effects of MP2RAGE B1+ sensitivity on inter-site T1 reproducibility and hippocampal morphometry at 7T. NeuroImage 224, 117373. https://doi.org/10.1016/j.neuroimage.2020.117373
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Harrison, S.J., Bianchi, S., Heinzle, J., Stephan, K.E., Iglesias, S., Kasper, L., 2021. A Hilbert-based method for processing respiratory timeseries. NeuroImage 230, 117787. https://doi.org/10.1016/j.neuroimage.2021.117787
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Kashyap, S., Ivanov, D., Havlicek, M., Huber, L., Poser, B.A., and Uludağ, K., 2021. Sub-millimetre resolution laminar fMRI using Arterial Spin Labelling in humans at 7 T. PLOS ONE 16, e0250504. https://doi.org/10.1371/journal.pone.0250504
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Maier, O., Baete, S.H., Fyrdahl, A., Hammernik, K., Harrevelt, S., Kasper, L., Karakuzu, A., Loecher, M., Patzig, F., Tian, Y., Wang, K., Gallichan, D., Uecker, M., Knoll, F., 2021. CG-SENSE revisited: Results from the first ISMRM reproducibility challenge. Magnetic Resonance in Medicine 85, 1821-1839. https://doi.org/10.1002/mrm.28569
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Wiesner, H.M., Balla, D.Z., Scheffler, K., Uğurbil, K., Zhu, X.-H., Chen, W., Uludağ, K., Pohmann, R., 2021. Quantitative and simultaneous measurement of oxygen consumption rates in rat brain and skeletal muscle using 17O MRS imaging at 16.4T. Magnetic Resonance in Medicine 85, 2232-2246. https://doi.org/10.1002/mrm.28552
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Kurban, D., Ivanov, D., Kashyap, S., Huber, L., Liberman, G., and Poser, B. A., 2021. Concurrent CBF and BOLD fMRI with dual-echo spiral simultaneous multi-slice acquisitions at 7T. NeuroImage 247, 118820. https://doi.org/10.1016/j.neuroimage.2021.118820
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Pfaffenrot, V., Voelker, M. N., Kashyap, S., and Koopmans, P. J., 2021. Laminar fMRI using T2-prepared multi-echo FLASH. NeuroImage 236, 118163. https://doi.org/10.1016/j.neuroimage.2021.118163
2020
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Havlicek, M., Uludağ, K., 2020. A dynamical model of the laminar BOLD response. Neuroimage 204, 116209. https://doi.org/10.1016/j.neuroimage.2019.116209
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Huber, L., Finn, E.S., Chai, Y., Goebel, R., Stirnberg, R., Stöcker, T., Marrett, S., Uludag, K., Kim, S.-G., Han, S., Bandettini, P.A., Poser, B.A., 2020. Layer-dependent functional connectivity methods. Prog Neurobiol 101835. https://doi.org/10.1016/j.pneurobio.2020.101835
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Lau, J.C., Xiao, Y., Haast, R.A.M., Gilmore, G., Uludağ, K., MacDougall, K.W., Menon, R.S., Parrent, A.G., Peters, T.M., Khan, A.R., 2020. Direct visualization and characterization of the human zona incerta and surrounding structures. Hum Brain Mapp. https://doi.org/10.1002/hbm.25137
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Marquardt, I., De Weerd, P., Schneider, M., Gulban, O.F., Ivanov, D., Wang, Y., Uludağ, K., 2020. Feedback contribution to surface motion perception in the human early visual cortex. Elife 9. https://doi.org/10.7554/eLife.50933
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Priovoulos, N., van Boxel, S.C.J., Jacobs, H.I.L., Poser, B.A., Uludag, K., Verhey, F.R.J., Ivanov, D., 2020. Unraveling the contributions to the neuromelanin-MRI contrast. Brain Struct Funct. https://doi.org/10.1007/s00429-020-02153-z
2019
- Betts, M.J., Kirilina, E., Otaduy, M.C.G., Ivanov, D., Acosta-Cabronero, J., Callaghan, M.F., Lambert, C., Cardenas-Blanco, A., Pine, K., Passamonti, L., Loane, C., Keuken, M.C., Trujillo, P., Lüsebrink, F., Mattern, H., Liu, K.Y., Priovoulos, N., Fliessbach, K., Dahl, M.J., Maaß, A., Madelung, C.F., Meder, D., Ehrenberg, A.J., Speck, O., Weiskopf, N., Dolan, R., Inglis, B., Tosun, D., Morawski, M., Zucca, F.A., Siebner, H.R., Mather, M., Uludag, K., Heinsen, H., Poser, B.A., Howard, R., Zecca, L., Rowe, J.B., Grinberg, L.T., Jacobs, H.I.L., Düzel, E., Hämmerer, D., 2019. Locus coeruleus imaging as a biomarker for noradrenergic dysfunction in neurodegenerative diseases. Brain 142, 2558–2571. https://doi.org/10.1093/brain/awz193
- Düzel, E., Acosta-Cabronero, J., Berron, D., Biessels, G.J., Björkman-Burtscher, I., Bottlaender, M., Bowtell, R., Buchem, M.V., Cardenas-Blanco, A., Boumezbeur, F., Chan, D., Clare, S., Costagli, M., de Rochefort, L., Fillmer, A., Gowland, P., Hansson, O., Hendrikse, J., Kraff, O., Ladd, M.E., Ronen, I., Petersen, E., Rowe, J.B., Siebner, H., Stoecker, T., Straub, S., Tosetti, M., Uludag, K., Vignaud, A., Zwanenburg, J., Speck, O., 2019. European Ultrahigh-Field Imaging Network for Neurodegenerative Diseases (EUFIND). Alzheimers Dement (Amst) 11, 538–549. https://doi.org/10.1016/j.dadm.2019.04.010
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Kleinloog, J.P.D., Mensink, R.P., Ivanov, D., Adam, J.J., Uludağ, K., Joris, P.J., 2019. Aerobic Exercise Training Improves Cerebral Blood Flow and Executive Function: A Randomized, Controlled Cross-Over Trial in Sedentary Older Men. Front Aging Neurosci 11, 333. https://doi.org/10.3389/fnagi.2019.00333
Abstracts
2021
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Dubovan, P., Kasper, L., Uludağ, K., Baron, C.A., 2021. On the impact of B0 map resolution and undersampling on reconstructions using expanded encoding models, in: Proc. Intl. Soc. Mag. Reson. Med. 29. Presented at the ISMRM, Virtual, p. 892. https://cds.ismrm.org/protected/21MPresentations/abstracts/0892.html
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Wu, Z., Kasper, L., Uludağ, K., 2021. Radial Navigator (radNAV) for Rapid GRE (Turbo-FLASH) Sequence, in: Proc. Intl. Soc. Mag. Reson. Med. 29. Presented at the ISMRM, Virtual, p. 1367. https://cds.ismrm.org/protected/21MPresentations/abstracts/1367.html
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Haast, R. A. M., Kashyap, S., Yousif, M. D., Ivanov, D., Poser, B. A., and Khan, A. R., 2021. Delineating perfusion and the effects of vascularisation patterns across the hippocampal subfields at 7T, in: Proc. Intl. Soc. Mag. Reson. Med. 29. Presented at the ISMRM, Virtual, p. 0095. https://index.mirasmart.com/ISMRM2021/PDFfiles/0095.html
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Kashyap, S., Haast, R. A. M., Kirk, T. F., Vu, A. T., Kurban, D., Hellenbrand, R., Wiggins, C. J., Roebroeck, A., Khan, A. R., Feinberg, D. A., Poser, B. A., and Ivanov, D., 2021. The impact of B1+ on the optimisation of high-resolution ASL acquisitions at 7T, in: Proc. Intl. Soc. Mag. Reson. Med. 29. Presented at the ISMRM, Virtual, p. 1417. https://index.mirasmart.com/ISMRM2021/PDFfiles/1417.html
2020
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Wu, Z., Uludağ, K., 2020. Motion estimation and correction with joint optimization for wave-CAIPI acquisition, in: Proc. Intl. Soc. Mag. Reson. Med. 28. Presented at the ISMRM, Sydney, Australia, p. 469. https://cds.ismrm.org/protected/20MPresentations/abstracts/0469.html